OBO Foundry dashboard analysis¶

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/tmp/ipykernel_535/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           3
unknown                  1
OWL Functional Syntax    1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 6269.6 6049.982050 0.0 2288.0 5352.0 8110.0 15598.0
SubClassOf 4 1005.6 737.401722 0.0 518.0 1155.0 1657.0 1698.0
Declaration 4 951.2 689.622143 0.0 531.0 1226.0 1231.0 1768.0
DisjointClasses 3 17.2 17.824141 0.0 0.0 19.0 25.0 42.0
TransitiveObjectProperty 3 4.6 4.277850 0.0 0.0 7.0 7.0 9.0
EquivalentClasses 2 5.2 8.671793 0.0 0.0 0.0 6.0 20.0
IrrefexiveObjectProperty 2 1.0 1.732051 0.0 0.0 0.0 1.0 4.0
InverseObjectProperties 2 12.0 16.673332 0.0 0.0 0.0 26.0 34.0
FunctionalObjectProperty 2 2.0 2.828427 0.0 0.0 0.0 4.0 6.0
EquivalentObjectProperties 2 4.0 7.382412 0.0 0.0 0.0 3.0 17.0
SubPropertyChainOf 2 3.2 6.610598 0.0 0.0 0.0 1.0 15.0
SubObjectPropertyOf 2 36.0 49.295030 0.0 0.0 0.0 90.0 90.0
ObjectPropertyRange 2 26.2 38.964086 0.0 0.0 0.0 44.0 87.0
SymmetricObjectProperty 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
ClassAssertion 2 4.0 8.396428 0.0 0.0 0.0 1.0 19.0
SubAnnotationPropertyOf 2 5.4 8.354639 0.0 0.0 0.0 8.0 19.0
ObjectPropertyDomain 2 28.8 41.661733 0.0 0.0 0.0 53.0 91.0
AsymmetricObjectProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
SubDataPropertyOf 1 2.2 4.919350 0.0 0.0 0.0 0.0 11.0
FunctionalDataProperty 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
ObjectPropertyAssertion 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
DifferentIndividuals 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0
DataPropertyRange 1 4.8 10.733126 0.0 0.0 0.0 0.0 24.0
DataPropertyDomain 1 2.2 4.919350 0.0 0.0 0.0 0.0 11.0
AnnotationPropertyRangeOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0
AnnotationPropertyDomain 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
InverseFunctionalObjectProperty 1 0.4 0.894427 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 2937.6 2139.996682 0.0 1531.0 3429.0 4711.0 5017.0
ObjectSomeValuesFrom 4 153.0 287.714268 0.0 12.0 13.0 75.0 665.0
ObjectAllValuesFrom 2 7.8 14.324804 0.0 0.0 0.0 6.0 33.0
ObjectComplementOf 2 6.8 13.084342 0.0 0.0 0.0 4.0 30.0
ObjectExactCardinality 2 0.4 0.547723 0.0 0.0 0.0 1.0 1.0
ObjectIntersectionOf 2 9.2 12.774976 0.0 0.0 0.0 20.0 26.0
ObjectMinCardinality 2 1.4 2.607681 0.0 0.0 0.0 1.0 6.0
ObjectUnionOf 2 10.2 18.198901 0.0 0.0 0.0 9.0 42.0
DataExactCardinality 1 1.2 2.683282 0.0 0.0 0.0 0.0 6.0
DataMinCardinality 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
DataSomeValuesFrom 1 5.2 11.627553 0.0 0.0 0.0 0.0 26.0
ObjectMaxCardinality 1 0.2 0.447214 0.0 0.0 0.0 0.0 1.0
ObjectOneOf 1 0.6 1.341641 0.0 0.0 0.0 0.0 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 ngbo 0.430 0.860 0.0
0 bpdo 0.411 0.822 0.0
1 mcro 0.386 0.771 0.0
4 vario 0.155 0.311 0.0
3 scho 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 5.0 0.2764 0.190301 0.0 0.155 0.386 0.411 0.43
score_dash 5.0 0.5528 0.380298 0.0 0.311 0.771 0.822 0.86
score_impact 5.0 0.0000 0.000000 0.0 0.000 0.000 0.000 0.00

OBO dependency graph